Thanks for all the responses to this issue from everyone. I have done some internet digging and found the answer. In essence there are two power sources for the e call emergency call system. The 12 volt battery in the engine bay and another back up battery behind the central console. If either (or both) are too low in voltage the sort of problems I described in my original post are characteristic. I have copied and pasted the search replies below which tell the full story and my observation that the problem went away after an extended drive is actually mentioned.
Does the honda jazz hybrid have a small backup battery for the emergency call system in the roof lining ?
Yes, the Honda Jazz Hybrid features a small, dedicated backup battery for its emergency call (eCall) system, but it is not located in the roof lining.
While the physical "SOS" button and its indicator light are mounted in the overhead console near the roof lining, the actual electronic control module housing the backup battery is located behind the vehicle's dashboard panels.
System Details & Lifespan
• Purpose: The backup battery ensures that the eCall system can still transmit your GPS coordinates and establish a call to emergency services if a serious collision completely cuts off power from the car's primary 12-volt battery.
• Lifespan: Honda states that this backup battery is designed to operate for at least 3 years.
• Low Battery Warning: If the backup battery's charge drops too low or its internal resistance breaks down, the eCall indicator light on your ceiling console will blink red to alert you that it needs replacement.
• Replacement: Honda does not sell this internal battery for direct consumer purchase, and it must be replaced by a qualified technician or dealer.
1. The Direct Fixes
• Drive the vehicle continuously: The eCall backup battery automatically recharges via the main powertrain while the car's power system is turned ON. If the car has been sitting or only used for very short trips, driving it for an extended period (typically 1 to 2 hours) should top up the battery and change the indicator light back to green.
• Check the main 12V battery: On the Honda Jazz, a weak or failing main 12V starter battery often stops the eCall backup battery from maintaining its charge, resulting in false or persistent alerts. Having a dealer test or change your primary 12V battery may solve the issue.
• Dealer Battery Replacement: If the backup battery has entirely degraded from age, it can enter a "locked state" where it will no longer accept a charge. It must be physically replaced, and a technician will need to use Honda diagnostics to clear the locked error code.
For anyone interested the cost of the back up battery is £85 on eBay and double or more from other parts suppliers even if a DIY fix was viable ( although not recommend naturally )