Ive been having that problem for different causes.
The first one is old rubber seal. the rubber that your door press is weary and needs replacement or even better you can fit a rubber hose inside, this way it will gain strength and water won't get in again.
the second is the hot air system. If you look from the engine side, you will notice two hoses, trough this hoses is flowing hot water (or engine coolant). inside your vehicle you will have some kind of radiator, that helps to heat air inside the car when you need it. well if this system breaks you will have a lot of fluid inside your car, and it will loose engine coolant as well. If you don't need hot air, you can unplug those hoses on the engine side and link them, so water will flow back to the engine's radiator. If you need hot air, you better get your car to a mechanic.
hope is the first one. cheers!