I see you are talking about "water reservoir". I am guessing you are talking of the engine coolant and have been topping up the white plastic reservoir in front of the engine by the bonnet catch (which is an expansion box for the liquid to expand into).
I second the explanation by monkeydave. As reassurance, the level (when cold) in my own white plastic container is about 2 cm from the maximum mark.
I had a Honda Civic for over 10 years from new (old model) where the level (when cold) was just on the MINIMUM mark. Each year I pointed this out to the Honda dealer who, each year, assured me this was fine. Certainly I had no problems.
Several thoughts though....
If you have been topping this up with water alone, you will have diluted the antifreeze content in the coolant. This is fine now, (and in a real emergency), but not in winter when the diluted coolant may freeze with great damage likely to the engine.
I understand that it is important that the correct type of Honda coolant is used (I am now getting out of my depth!). Honda, I think, supply, as standard, a coolant that does not need to be replaced (touched even!) for 10 years. I think other general coolants need to be replaced every two or three years.
To be safe, I would visit a Honda dealer and ask them to check the strength of the coolant that remains in the car (i.e. do a winter check) and to replace the coolant to the correct Honda type and strength as necessary.
There are those here, much more technically knowledgeable than I, who may have other views. I know I was equally puzzled by the coolant level.